miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|125507167|gb|EL529748.1|EL529748 GGGGACGGGTTGGTTACGGAGATAGGCCTGCACGCGCAACAAGGACAACATTGAGCTTTGACCATGGTGAAAGTAACATT
TAACTCGTCCTTTGGACAAAAGGATCTGAAAAAACCTTGCGCTGATGAAGCGCTTATTCCTACTGAAAGGGACCTGGAGG
AGGCTCGCCCGGTGAGGCACCAGTCCAGAGCCTGGTGCTGGTGTATGCGTCTGGGTCTGGCTGTCATGCTGTCAGGAGTG
GTCATCGTAGGAGCTTACCTCTACAAGTCCTACATAATGAGGGATGTGTTCTTCTGTGGCGTGGACTACAGAGCGGAGGA
CTACATGGTCCAGGAGGACGAGGGGCAGGAGGGGCTCCCGTCCCAGCTGCGCCACAGGAGGCTGACAGCCTACCTGGACC
TGAGCCTGAACAAGTGCTATGTCATTCCCCTCAACACCTCCATTGTCATGCCTCCTAAAGACTTCCTGGAACTGCTGGTC
AACATCAAGGCTGGAACCTACCTGCCTCAGTCCTACCTGGTCCACGAGCAGATGATCGTGACCGAGCGTCTGGACAACAT
GGAGGAGCTTGGCTTCTTCATCAACTCCCTCTGCCGAGGAAGAGATACCTACAGACTGGAGCGCAGAGAGACCATCCCTG
GTATCCAAAAGCGCGAAGCCTTGAACTGCCACAAGATCCGCCACTTCGAGAACAAGTTTGTGGTGGAGACTGAGATCTGT
GAAGCTTAAGATGTGAGGGAAGGTTGGACGGATAGACAGACATCTTCCTGTCCAGCCATGTATAGTTCCTATTCCTCCTG
TTCCTCCTGCCATCATCATAGATCCTTTACTGCTTACAGTGAGGCTAATGAAGGCTAATTCCAGGCAATAACTGTGGGTA
GGTATAAAGCAGTTTTCTTTTTCACTGTGTAAAAAC




Most similar to sp|O42204|ITM2B_CHICK

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|O42204|ITM2B_CHICK Integral membrane protein 2B OS=Gallus gallus
           GN=ITM2B PE=2 SV=1
          Length = 262

 Score =  248 bits (632), Expect = 6e-65
 Identities = 131/261 (50%), Positives = 171/261 (65%), Gaps = 41/261 (15%)
 Frame = +1

Query: 64  MVKVTFNSSFGQKDL--KKPCADEALI--PTERDLEEARPVRHQSRAWCWCMRLGLAVML 231
           MVKV+FNS+   K+   K+    + LI  P  ++ E+        RAWCWCM  GLA ML
Sbjct: 1   MVKVSFNSALAHKEAANKEEENSQVLILPPDAKEPEDVVVPAGHKRAWCWCMCFGLAFML 60

Query: 232 SGVVIVGAYLYKSYIMRD--VFFCGVDYRAEDYMVQEDEGQ------------------- 348
           +GV++ GAYLYK +  +   V+FCG+ Y  +   + E   Q                   
Sbjct: 61  AGVILGGAYLYKYFAFQQGGVYFCGIKYIEDGLSLPESGAQLKSARYHTIEQNIQILEEE 120

Query: 349 -------------EGLPSQLRH---RRLTAYLDLSLNKCYVIPLNTSIVMPPKDFLELLV 480
                        +  P+ + H   RRLTAYLDLSL+KCYVIPLNTS+VMPPK+FLELL+
Sbjct: 121 DVEFISVPVPEFADSDPADIVHDFHRRLTAYLDLSLDKCYVIPLNTSVVMPPKNFLELLI 180

Query: 481 NIKAGTYLPQSYLVHEQMIVTERLDNMEELGFFINSLCRGRDTYRLERRETIPGIQKREA 660
           NIKAGTYLPQSYL+HEQMIVT+R++N+++LGFFI  LCRG++TY+L+R+E + GIQKREA
Sbjct: 181 NIKAGTYLPQSYLIHEQMIVTDRIENVDQLGFFIYRLCRGKETYKLQRKEAMKGIQKREA 240

Query: 661 LNCHKIRHFENKFVVETEICE 723
           +NC KIRHFEN+F +ET ICE
Sbjct: 241 VNCRKIRHFENRFAMETLICE 261